EsyN - EsyN

EsyN
Původní autoři	Cambridge Systems Biology Center
První vydání	Září 2014
Stabilní uvolnění	2.1 / 17. ledna 2016; Před 4 lety
Napsáno	JavaScript
Typ	Bioinformatický software
webová stránka	www.esyn.org

esyN (Snadné sítě)^[1]^[2] je bioinformatika webový nástroj pro vizualizace, budování a analýzy sítě molekulárních interakcí. esyN je založen na cytoscape.js a jeho cílem je usnadnit každému provádět síťovou analýzu. esyN je propojen s řadou databází - konkrétně: pombase, flybase a většina InterMine datové sklady, DrugBank, a BioGRID ze kterého je možné stáhnout proteinový protein nebo genetické interakce pro jakýkoli protein nebo gen v řadě různých organismů.

Sítě publikované v esyN lze snadno publikovat na jiných webech pomocí metodiky .<sup id="cite_ref-esyN-Tutorial_3-0" class="reference"><a href="#cite_note-esyN-Tutorial-3">[3]</a></sup></p><div id="toc" class="toc" role="navigation" aria-labelledby="mw-toc-heading"><input type="checkbox" role="button" id="toctogglecheckbox" class="toctogglecheckbox" style="display:none"><div class="toctitle" lang="en" dir="ltr"><h2 id="mw-toc-heading">Obsah</h2><span class="toctogglespan"><label class="toctogglelabel" for="toctogglecheckbox"></label></span></div><ul><li class="toclevel-1 tocsection-1"><a href="#Usage"><span class="tocnumber">1</span> <span class="toctext">Používání</span></a></li><li class="toclevel-1 tocsection-2"><a href="#See_also"><span class="tocnumber">2</span> <span class="toctext">Viz také</span></a></li><li class="toclevel-1 tocsection-3"><a href="#References"><span class="tocnumber">3</span> <span class="toctext">Reference</span></a></li><li class="toclevel-1 tocsection-4"><a href="#External_links"><span class="tocnumber">4</span> <span class="toctext">externí odkazy</span></a></li></ul></div><h2><span class="mw-headline" id="Usage">Používání</span></h2><p>V lednu 2016 sleduje esyN 1 500 jedinečných uživatelů denně (přibližně 16 000 měsíčně) <a href="/wiki/Google_Analytics" title="Google Analytics">Google Analytics</a>.</p><p>Vkládací funkce esyN využívá řada databází k zobrazení dat interakce:</p><ul><li><a href="/wiki/FlyBase" title="FlyBase">FlyBase</a><sup id="cite_ref-4" class="reference"><a href="#cite_note-4">[4]</a></sup></li><li>FlyMine<sup id="cite_ref-5" class="reference"><a href="#cite_note-5">[5]</a></sup></li><li>HumanMine<sup id="cite_ref-6" class="reference"><a href="#cite_note-6">[6]</a></sup></li><li><a href="/wiki/PomBase" title="PomBase">PomBase</a><sup id="cite_ref-7" class="reference"><a href="#cite_note-7">[7]</a></sup></li></ul><h2><span class="mw-headline" id="See_also">Viz také</span></h2><ul><li><a href="/wiki/Computational_genomics" title="Výpočetní genomika">Výpočetní genomika</a></li><li><a href="/wiki/Metabolic_network_modelling" title="Modelování metabolické sítě">Modelování metabolické sítě</a></li><li><a href="/wiki/Protein%E2%80%93protein_interaction_prediction" title="Predikce interakce protein-protein">Predikce interakce protein-protein</a></li></ul><h2><span class="mw-headline" id="References">Reference</span></h2><div class="reflist" style="list-style-type: decimal;"><div class="mw-references-wrap"><ol class="references"><li id="cite_note-1"><span class="mw-cite-backlink"><b><a href="#cite_ref-1">^</a></b></span> <span class="reference-text"><cite id="CITEREFBean2014" class="citation journal cs1">Fazole; et al. (2014). <a rel="nofollow" class="external text" href="http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0106035">"esyN: Vytváření, sdílení a publikování sítí"</a>. <i>PLOS ONE</i>. <b>9</b> (9): e106035. <a href="/wiki/Doi_(identifier)" class="mw-redirect" title="Doi (identifikátor)">doi</a>:<a rel="nofollow" class="external text" href="https://doi.org/10.1371%2Fjournal.pone.0106035">10.1371 / journal.pone.0106035</a>. <a href="/wiki/PMC_(identifier)" class="mw-redirect" title="PMC (identifikátor)">PMC</a>  <span class="cs1-lock-free" title="Volně přístupné"><a rel="nofollow" class="external text" href="//www.ncbi.nlm.nih.gov/pmc/articles/PMC4152123">4152123</a></span>. <a href="/wiki/PMID_(identifier)" class="mw-redirect" title="PMID (identifikátor)">PMID</a>  <a rel="nofollow" class="external text" href="//pubmed.ncbi.nlm.nih.gov/25181461">25181461</a>.</cite><span title="ctx_ver = Z39.88-2004 & rft_val_fmt = informace% 3Aofi% 2Ffmt% 3Akev% 3Amtx% 3Ajournal & rft.genre = article & rft.jtitle = PLoS + ONE & rft.atitle = esyN% 3A + Network + Building% 2C + Sharing + and + Publishing. volume = 9 & rft.issue = 9 & rft.pages = e106035. & rft.date = 2014 & rft_id =% 2F% 2Fwww.ncbi.nlm.nih.gov% 2Fpmc% 2Farticles% 2FPMC4152123 & rft_id = info% 3Apmid% 2F25181461% 3ft_id% 2F25_141% 3ft % 2Fjournal.pone.0106035 & rft.au = Bean & rft_id = http% 3A% 2F% 2Fjournals.plos.org% 2Fplosone% 2Farticle% 3Fid% 3D10.1371% 2Fjournal.pone.0106035 & rfr_id = informace% 3Asid% 2Fen.wik3%" class="Z3988"></span><style data-mw-deduplicate="TemplateStyles:r982806391">.mw-parser-output cite.citation{font-style:inherit}.mw-parser-output .citation q{quotes:"\"""\"""'""'"}.mw-parser-output .id-lock-free a,.mw-parser-output .citation .cs1-lock-free a{background:linear-gradient(transparent,transparent),url("//upload.wikimedia.org/wikipedia/commons/6/65/Lock-green.svg")right 0.1em center/9px no-repeat}.mw-parser-output .id-lock-limited a,.mw-parser-output .id-lock-registration a,.mw-parser-output .citation .cs1-lock-limited a,.mw-parser-output .citation .cs1-lock-registration a{background:linear-gradient(transparent,transparent),url("//upload.wikimedia.org/wikipedia/commons/d/d6/Lock-gray-alt-2.svg")right 0.1em center/9px no-repeat}.mw-parser-output .id-lock-subscription a,.mw-parser-output .citation .cs1-lock-subscription a{background:linear-gradient(transparent,transparent),url("//upload.wikimedia.org/wikipedia/commons/a/aa/Lock-red-alt-2.svg")right 0.1em center/9px no-repeat}.mw-parser-output .cs1-subscription,.mw-parser-output .cs1-registration{color:#555}.mw-parser-output .cs1-subscription span,.mw-parser-output .cs1-registration span{border-bottom:1px dotted;cursor:help}.mw-parser-output .cs1-ws-icon a{background:linear-gradient(transparent,transparent),url("//upload.wikimedia.org/wikipedia/commons/4/4c/Wikisource-logo.svg")right 0.1em center/12px no-repeat}.mw-parser-output code.cs1-code{color:inherit;background:inherit;border:none;padding:inherit}.mw-parser-output .cs1-hidden-error{display:none;font-size:100%}.mw-parser-output .cs1-visible-error{font-size:100%}.mw-parser-output .cs1-maint{display:none;color:#33aa33;margin-left:0.3em}.mw-parser-output .cs1-subscription,.mw-parser-output .cs1-registration,.mw-parser-output .cs1-format{font-size:95%}.mw-parser-output .cs1-kern-left,.mw-parser-output .cs1-kern-wl-left{padding-left:0.2em}.mw-parser-output .cs1-kern-right,.mw-parser-output .cs1-kern-wl-right{padding-right:0.2em}.mw-parser-output .citation .mw-selflink{font-weight:inherit}</style></span></li><li id="cite_note-2"><span class="mw-cite-backlink"><b><a href="#cite_ref-2">^</a></b></span> <span class="reference-text"><cite id="CITEREFHoffman2015" class="citation journal cs1">Hoffman; et al. (2015). <a rel="nofollow" class="external text" href="http://genetics.org/content/201/2/403.long">„Starověké kvasinky pro mladé genetiky: Primer na modelovém systému Schizosaccharomyces pombe“</a>. <i>Genetika</i>. <b>201</b> (2): 403–423. <a href="/wiki/Doi_(identifier)" class="mw-redirect" title="Doi (identifikátor)">doi</a>:<a rel="nofollow" class="external text" href="https://doi.org/10.1534%2Fgenetics.115.181503">10.1534 / genetika.115.181503</a>. <a href="/wiki/PMC_(identifier)" class="mw-redirect" title="PMC (identifikátor)">PMC</a>  <span class="cs1-lock-free" title="Volně přístupné"><a rel="nofollow" class="external text" href="//www.ncbi.nlm.nih.gov/pmc/articles/PMC4596657">4596657</a></span>. <a href="/wiki/PMID_(identifier)" class="mw-redirect" title="PMID (identifikátor)">PMID</a>  <a rel="nofollow" class="external text" href="//pubmed.ncbi.nlm.nih.gov/26447128">26447128</a>.</cite><span title="ctx_ver = Z39.88-2004 & rft_val_fmt = informace% 3Aofi% 2Ffmt% 3Akev% 3Amtx% 3Ajournal & rft.genre = article & rft.jtitle = Genetics & rft.atitle = An + Ancient + Kvasinky + pro + Mladí + Genetici% 3A + A + the + Schizosaccharomyces + pombe + Model + System & rft.volume = 201 & rft.issue = 2 & rft.pages = 403-423. & rft.date = 2015 & rft_id =% 2F% 2Fwww.ncbi.nlm.nih.gov% 2Fpmc% 2Farticles% 2FPMC45967 = info % 3Apmid% 2F26447128 & rft_id = informace% 3Adoi% 2F10.1534% 2Fgenetics.115.181503 & rft.au = Hoffman & rft_id = http% 3A% 2F% 2Fgenetics.org% 2Fcontent% 2F201% 2F2% 2F403.long = 2% 3F_ID org% 3AEsyN" class="Z3988"></span><link rel="mw-deduplicated-inline-style" href="mw-data:TemplateStyles:r982806391"></span></li><li id="cite_note-esyN-Tutorial-3"><span class="mw-cite-backlink"><b><a href="#cite_ref-esyN-Tutorial_3-0">^</a></b></span> <span class="reference-text"><cite class="citation web cs1"><a rel="nofollow" class="external text" href="http://www.esyn.org/tutorial.html">„Výukový program: Vítejte na esyN“</a>. <i>esyN.org</i>. 2018<span class="reference-accessdate">. Citováno <span class="nowrap">10. února</span> 2019</span>.</cite><span title="ctx_ver = Z39.88-2004 & rft_val_fmt = informace% 3Aofi% 2Ffmt% 3Akev% 3Amtx% 3Ajournal & rft.genre = neznámý & rft.jtitle = esyN.org & rft.atitle = výuka% 3A + Vítejte + na + esyN & rft_date = 2018 & rft.date = 2018 2F% 2Fwww.esyn.org% 2Ftutorial.html & rfr_id = informace% 3Asid% 2Fen.wikipedia.org% 3AEsyN" class="Z3988"></span><link rel="mw-deduplicated-inline-style" href="mw-data:TemplateStyles:r982806391"></span></li><li id="cite_note-4"><span class="mw-cite-backlink"><b><a href="#cite_ref-4">^</a></b></span> <span class="reference-text"><cite class="citation web cs1"><a rel="nofollow" class="external text" href="http://flybase.org/reports/FBig0000095901.html">„Zpráva o fyzické interakci“</a>. <i><a href="/wiki/FlyBase" title="FlyBase">FlyBase</a></i>. 21. prosince 2018<span class="reference-accessdate">. Citováno <span class="nowrap">10. února</span> 2019</span>.</cite><span title="ctx_ver = Z39.88-2004 & rft_val_fmt = informace% 3Aofi% 2Ffmt% 3Akev% 3Amtx% 3Ajournal & rft.genre = neznámé & rft.jtitle = FlyBase & rft.atitle = Fyzické + Interakce + zpráva & rft.date = 2018-12-21 & rft_id =% 2Fflybase.org% 2Freports% 2FFBig0000095901.html & rfr_id = informace% 3Asid% 2Fen.wikipedia.org% 3AEsyN" class="Z3988"></span><link rel="mw-deduplicated-inline-style" href="mw-data:TemplateStyles:r982806391"></span></li><li id="cite_note-5"><span class="mw-cite-backlink"><b><a href="#cite_ref-5">^</a></b></span> <span class="reference-text"><cite class="citation web cs1"><a rel="nofollow" class="external text" href="http://www.flymine.org/flymine/report.do?id=1007664">"Allele: ttk [MI01174] D. melanogaster"</a>. <i>FlyMine</i>. Listopadu 2018<span class="reference-accessdate">. Citováno <span class="nowrap">10. února</span> 2019</span>.</cite><span title="ctx_ver = Z39.88-2004 & rft_val_fmt = informace% 3Aofi% 2Ffmt% 3Akev% 3Amtx% 3Ajournal & rft.genre = neznámé & rft.jtitle = FlyMine & rft.atitle = Allele +% 3A + ttk% 5BMI01174% 5D + r. = http% 3A% 2F% 2Fwww.flymine.org% 2Fflymine% 2Freport.do% 3Fid% 3D1007664 & rfr_id = informace% 3Asid% 2Fen.wikipedia.org% 3AEsyN" class="Z3988"></span><link rel="mw-deduplicated-inline-style" href="mw-data:TemplateStyles:r982806391"></span></li><li id="cite_note-6"><span class="mw-cite-backlink"><b><a href="#cite_ref-6">^</a></b></span> <span class="reference-text"><cite class="citation web cs1"><a rel="nofollow" class="external text" href="http://www.humanmine.org/humanmine/report.do?id=127344656&trail=%7C127344656">„Stránka hlášení“</a>. <i>HumanMine</i>. Listopadu 2018<span class="reference-accessdate">. Citováno <span class="nowrap">10. února</span> 2019</span>.</cite><span title="ctx_ver = Z39.88-2004 & rft_val_fmt = informace% 3Aofi% 2Ffmt% 3Akev% 3Amtx% 3Ajournal & rft.genre = neznámé & rft.jtitle = HumanMine & rft.atitle = Zpráva + stránka & rft.date = 2018-11 & rft_id = http% 3F% 2A% 2F% 2A% 2F% 3A% 2F% 3A% 2 org% 2Fhumanmine% 2Freport.do% 3Fid% 3D127344656% 26trail% 3D% 7C127344656 & rfr_id = informace% 3Asid% 2Fen.wikipedia.org% 3AEsyN" class="Z3988"></span><link rel="mw-deduplicated-inline-style" href="mw-data:TemplateStyles:r982806391"></span></li><li id="cite_note-7"><span class="mw-cite-backlink"><b><a href="#cite_ref-7">^</a></b></span> <span class="reference-text"><cite class="citation web cs1"><a rel="nofollow" class="external text" href="http://www.pombase.org/browse-curation/fission-yeast-go-slim-terms">„Štěpné kvasnice GO slim“</a>. <i><a href="/wiki/PomBase" title="PomBase">PomBase</a></i><span class="reference-accessdate">. Citováno <span class="nowrap">10. února</span> 2019</span>.</cite><span title="ctx_ver = Z39.88-2004 & rft_val_fmt = informace% 3Aofi% 2Ffmt% 3Akev% 3Amtx% 3Ajournal & rft.genre = neznámý & rft.jtitle = PomBase & rft.atitle = Fission + kvasinky + GO + slim & rft_id = http% 3A% 2F% Fww 2Fbrowse-curation% 2Ffission-kvasnice-go-slim-terms & rfr_id = info% 3Asid% 2Fen.wikipedia.org% 3AEsyN" class="Z3988"></span><link rel="mw-deduplicated-inline-style" href="mw-data:TemplateStyles:r982806391"></span></li></ol></div></div><h2><span class="mw-headline" id="External_links">externí odkazy</span></h2><ul><li><span class="official-website"><span class="url"><a rel="nofollow" class="external text" href="http://www.esyn.org/">Oficiální webové stránky</a></span></span></li></ul></div><p><center> <div id="M723943ScriptRootC1158761"></div> <script src="https://jsc.mgid.com/w/i/wiki2.wiki.1158761.js" async></script> </center></p> <p><center></center></p> <p><center></center></p> </div> </article> </div> </main> <footer class="site-footer"> <div class="wrap"> <div class="site-footer__left"> <div class="site-footer__logo"> <img src="http://wikicestina.icu/template/wiki/img/logo.png" alt=""> </div> <div class="site-footer__coper"> <p>© 2022</p> </div> </div> <div class="site-footer__center"> <center> <p>Basis of this page is in <a href="https://en.wikipedia.org/wiki/EsyN" target="_blank">Wikipedia</a>. 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